I would start looking closely at the wiring harness, especially where the connector for the throttle body is attached.
If you can monitor the throttle position sensor values with a scanner in real time, watch them and wiggle the pigtail while the engine is running. See if you get any fluctuation in the readings when wiggling the harness.
Water on a modern engine can be disastrous. I sold our 2012 Durango Crew to my brother when we bough the 2016 R/T back in 2016. The only issue I ever had with the 2012 was a fuel pump relay, and it was fixed under a recall. I sold it to him with 70k trouble free miles. He took it to a dealer who spilled steering fluid all over the engine bay, and to clean it up, they pressure washed it. From that moment on, the vehicle had all sorts of electrical issues. The dealer eventually had to run new wires to bypass sections of the harness ... it was a complete mess and still wasn't reliable even after the new wires were put in.
So anytime I hear about electrical issues triggered by water under the hood, it makes me suspect of some connector being damaged ... or some module having water damage or corrosion. These types of issues are very difficult to trace down to their root cause.
You need an experienced tech who knows how to use a scanner, and knows how to troubleshoot intermittent electrical issues. If the dealer you have the vehicle at now doesn't have someone with this sort of skill set, you might be best suited to try another dealer. Or ... call around to various service departments and explain what happened ... ask if they have a tech on staff who excels at these sorts of things. They will most likely be honest with you up front, as they'll know these things are hard to track down. If they don't have a skilled guy on staff, they probably won't want to mess with it.