OK here is what we think happened. They replaced the drivers door panel. I guess when that happened that car thought that it was being stolen(?). So the thief deterrent system kicked in, being that the fob was in the car, it got confused. When they pulled the power to the battery, I guess something really went afoul.
Long story short. The called the Dodge mech guy who told them to use the key to unlock the car and lock the car reset things. The check engine light was on for a bit but that has gone off. Interesting morning.